2.0 "Kaufbeuren" - 2018-10-17 Initial release of nf-core/eager featuring: FastQC read quality control (Optional) Read complexity filtering with FastP Read merging and clipping using AdapterRemoval v2 Mapping using BWA / BWA Mem or CircularMapper Library Complexity Estimation with Preseq Conversion and Filtering of BAM files using Samtools Damage assessment via DamageProfiler, additional filtering using PMDTools Duplication removal via DeDup BAM Clipping with BamUtil for UDGhalf protocols QualiMap BAM quality control analysis Furthermore, this already creates an interactive report using MultiQC, which will be upgraded in V2.1 "Ulm" to contain more aDNA specific metrics
[2.0.5] - 2019-01-30 Added #127 - Added a second testcase for testing the pipeline properly #129 - ...
[2.4.0] 2022-12-05 "Aparecium" Minor release adding fastp. Added #209 Template update to nf-core to...
[2.0.1] - 2018-11-02 Maintenance release for 2.0.1 Fixed #69 - FastQC issues with conda environment
nf-core/eager release 2.0.4 - 2019-01-07 Added #111 - Allow Zipped FastA reference input #113 - All...
[2.0.7] - 2019-06-10 Added #189 - Outputing unmapped reads in a fastq files with the --strip_input_...
Added Major #640 - Added a pre-metagenomic screening filtering of low-sequence complexity reads w...
Added #933 Added support for customising --seq-length in mapDamage rescaling (♥ to @ashildv for req...
Added Major Automated cloud tests with large-scale data on AWS Major Re-wrote input logic to accept...
[2.0.3] - 2018-12-12 Added #80 - BWA Index file handling #77 - Lots of documentation updates by @jf...
Added #722 - Adds bwa -o flag for more flexibility in bwa parameters #736 - Add printing of multiqc...
[2.4.1] - 2021-11-30 Added #805 Changes to bam_trim options to allow flexible trimming by library s...
Added #687 - Adds Kraken2 unique kmer counting report #676 - Refactor help message / summary messag...
Added #317 Added bcftools stats for general genotyping statistics of VCF files #651 - Adds removal ...
[2.4.3] - 2022-03-24 Added Fixed #828 Improved error message if required metagenomic screening para...
Added Fixed #882 Define DSL1 execution explicitly, as new versions Nextflow made DSL2 default (♥ to...
[2.0.5] - 2019-01-30 Added #127 - Added a second testcase for testing the pipeline properly #129 - ...
[2.4.0] 2022-12-05 "Aparecium" Minor release adding fastp. Added #209 Template update to nf-core to...
[2.0.1] - 2018-11-02 Maintenance release for 2.0.1 Fixed #69 - FastQC issues with conda environment
nf-core/eager release 2.0.4 - 2019-01-07 Added #111 - Allow Zipped FastA reference input #113 - All...
[2.0.7] - 2019-06-10 Added #189 - Outputing unmapped reads in a fastq files with the --strip_input_...
Added Major #640 - Added a pre-metagenomic screening filtering of low-sequence complexity reads w...
Added #933 Added support for customising --seq-length in mapDamage rescaling (♥ to @ashildv for req...
Added Major Automated cloud tests with large-scale data on AWS Major Re-wrote input logic to accept...
[2.0.3] - 2018-12-12 Added #80 - BWA Index file handling #77 - Lots of documentation updates by @jf...
Added #722 - Adds bwa -o flag for more flexibility in bwa parameters #736 - Add printing of multiqc...
[2.4.1] - 2021-11-30 Added #805 Changes to bam_trim options to allow flexible trimming by library s...
Added #687 - Adds Kraken2 unique kmer counting report #676 - Refactor help message / summary messag...
Added #317 Added bcftools stats for general genotyping statistics of VCF files #651 - Adds removal ...
[2.4.3] - 2022-03-24 Added Fixed #828 Improved error message if required metagenomic screening para...
Added Fixed #882 Define DSL1 execution explicitly, as new versions Nextflow made DSL2 default (♥ to...
[2.0.5] - 2019-01-30 Added #127 - Added a second testcase for testing the pipeline properly #129 - ...
[2.4.0] 2022-12-05 "Aparecium" Minor release adding fastp. Added #209 Template update to nf-core to...
[2.0.1] - 2018-11-02 Maintenance release for 2.0.1 Fixed #69 - FastQC issues with conda environment